PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008679-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 327aa    MW: 36861.9 Da    PI: 5.2174
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008679-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.8e-131462146
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT..TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg..kgRtlkqcksrwqk 46
                        +g+W++eEd  l+ +++q G+g +W + ++++    gRt++++k++w++
  WALNUT_00008679-RA 14 KGPWSPEEDATLKAYIEQNGTGgNWIALPQKIAqlPGRTDNDIKNYWNT 62
                        79*********************78777777777778**********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-19568IPR009057Homeodomain-like
SuperFamilySSF466891.79E-12869IPR009057Homeodomain-like
PROSITE profilePS5129418.196968IPR017930Myb domain
SMARTSM007179.4E-111366IPR001005SANT/Myb domain
PfamPF002491.9E-111462IPR001005SANT/Myb domain
CDDcd001674.78E-101664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDATLKAYIE QNGTGGNWIA LPQKIAQLPG RTDNDIKNYW  60
NTRLKKKLLG RRKESNMNRF SSIGAKDAND LEDNSYSPAL SSSALERLQL HMELQSLQKP  120
LYHNNTELWP KLHPLQEKMI QSLQSLNESP THLWQHAFPS PLQPGQGQKV DFYEPPTAAI  180
IQEDFARNSN TRPVSHELEN SLHVIPSSHN SMAFVTGNNI PTDSRTLVPK ADGIEHESIA  240
GIEVSAFQAE LDDFLSNRTG GFVSHDQDHQ MVELDCFKEM NSSKDSMIWW SNIDFDTNSA  300
TSNSWDSSTS VLQSEKIFQD YELGYNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014145.11e-127Myb domain protein 36
TrEMBLA0A061GXE31e-127A0A061GXE3_THECC; Myb domain protein 36
STRINGPOPTR_0018s10390.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-43myb domain protein 36